diff --git a/package-lock.json b/package-lock.json index 5a794d407d876f1ac448a0254aaf560339a77cab..598fcc11aaeafc5e92a0eb9756afde484772313e 100644 --- a/package-lock.json +++ b/package-lock.json @@ -2391,6 +2391,18 @@ "tweetnacl": "^0.14.3" } }, + "node_modules/binary": { + "version": "0.3.0", + "resolved": "https://registry.npmjs.org/binary/-/binary-0.3.0.tgz", + "integrity": "sha512-D4H1y5KYwpJgK8wk1Cue5LLPgmwHKYSChkbspQg5JtVuR5ulGckxfR62H3AE9UDkdMC8yyXlqYihuz3Aqg2XZg==", + "dependencies": { + "buffers": "~0.1.1", + "chainsaw": "~0.1.0" + }, + "engines": { + "node": "*" + } + }, "node_modules/binary-extensions": { "version": "2.2.0", "resolved": "https://registry.npmjs.org/binary-extensions/-/binary-extensions-2.2.0.tgz", @@ -2540,6 +2552,14 @@ "resolved": "https://registry.npmjs.org/buffer-from/-/buffer-from-1.1.2.tgz", "integrity": "sha512-E+XQCRwSbaaiChtv6k6Dwgc+bx+Bs6vuKJHHl5kox/BaKbhiXzqQOwK4cO22yElGp2OCmjwVhT3HmxgyPGnJfQ==" }, + "node_modules/buffers": { + "version": "0.1.1", + "resolved": "https://registry.npmjs.org/buffers/-/buffers-0.1.1.tgz", + "integrity": "sha512-9q/rDEGSb/Qsvv2qvzIzdluL5k7AaJOTrw23z9reQthrbF7is4CtlT0DXyO1oei2DCp4uojjzQ7igaSHp1kAEQ==", + "engines": { + "node": ">=0.2.0" + } + }, "node_modules/builtin-modules": { "version": "1.1.1", "resolved": "https://registry.npmjs.org/builtin-modules/-/builtin-modules-1.1.1.tgz", @@ -2644,6 +2664,17 @@ "node": ">=4" } }, + "node_modules/chainsaw": { + "version": "0.1.0", + "resolved": "https://registry.npmjs.org/chainsaw/-/chainsaw-0.1.0.tgz", + "integrity": "sha512-75kWfWt6MEKNC8xYXIdRpDehRYY/tNSgwKaJq+dbbDcxORuVrrQ+SEHoWsniVn9XPYfP4gmdWIeDk/4YNp1rNQ==", + "dependencies": { + "traverse": ">=0.3.0 <0.4" + }, + "engines": { + "node": "*" + } + }, "node_modules/chalk": { "version": "4.1.2", "resolved": "https://registry.npmjs.org/chalk/-/chalk-4.1.2.tgz", @@ -2745,6 +2776,14 @@ "node": ">=0.8" } }, + "node_modules/code-point-at": { + "version": "1.1.0", + "resolved": "https://registry.npmjs.org/code-point-at/-/code-point-at-1.1.0.tgz", + "integrity": "sha512-RpAVKQA5T63xEj6/giIbUEtZwJ4UFIc3ZtvEkiaUERylqe8xb5IvqcgOurZLahv93CLKfxcw5YI+DZcUBRyLXA==", + "engines": { + "node": ">=0.10.0" + } + }, "node_modules/color": { "version": "3.2.1", "resolved": "https://registry.npmjs.org/color/-/color-3.2.1.tgz", @@ -2812,6 +2851,14 @@ "node": ">= 0.8" } }, + "node_modules/commander": { + "version": "2.6.0", + "resolved": "https://registry.npmjs.org/commander/-/commander-2.6.0.tgz", + "integrity": "sha512-PhbTMT+ilDXZKqH8xbvuUY2ZEQNef0Q7DKxgoEKb4ccytsdvVVJmYqR0sGbi96nxU6oGrwEIQnclpK2NBZuQlg==", + "engines": { + "node": ">= 0.6.x" + } + }, "node_modules/commondir": { "version": "1.0.1", "resolved": "https://registry.npmjs.org/commondir/-/commondir-1.0.1.tgz", @@ -3215,6 +3262,14 @@ "node": ">=8.6" } }, + "node_modules/error-ex": { + "version": "1.3.2", + "resolved": "https://registry.npmjs.org/error-ex/-/error-ex-1.3.2.tgz", + "integrity": "sha512-7dFHNmqeFSEt2ZBsCriorKnn3Z2pj+fd9kmI6QoWw4//DL+icEBfc0U7qJCisqrTsKTjw4fNFy2pW9OqStD84g==", + "dependencies": { + "is-arrayish": "^0.2.1" + } + }, "node_modules/errorhandler": { "version": "1.5.1", "resolved": "https://registry.npmjs.org/errorhandler/-/errorhandler-1.5.1.tgz", @@ -3227,6 +3282,10 @@ "node": ">= 0.8" } }, + "node_modules/es-sink": { + "resolved": "packages/es-sink", + "link": true + }, "node_modules/es6-error": { "version": "4.1.1", "resolved": "https://registry.npmjs.org/es6-error/-/es6-error-4.1.1.tgz", @@ -3742,8 +3801,7 @@ "node_modules/graceful-fs": { "version": "4.2.10", "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.2.10.tgz", - "integrity": "sha512-9ByhssR2fPVsNZj478qUUbKfmL0+t5BDVyjShtyZZLiK7ZDAArFFfopyOTj0M05wE2tJPisA4iTnnXl2YoPvOA==", - "dev": true + "integrity": "sha512-9ByhssR2fPVsNZj478qUUbKfmL0+t5BDVyjShtyZZLiK7ZDAArFFfopyOTj0M05wE2tJPisA4iTnnXl2YoPvOA==" }, "node_modules/har-schema": { "version": "2.0.0", @@ -3853,6 +3911,11 @@ "integrity": "sha512-YXXAAhmF9zpQbC7LEcREFtXfGq5K1fmd+4PHkBq8NUqmzW3G+Dq10bI/i0KucLRwss3YYFQ0fSfoxBZYiGUqtQ==", "deprecated": "This module has moved and is now available at @hapi/hoek. Please update your dependencies as this version is no longer maintained an may contain bugs and security issues." }, + "node_modules/hosted-git-info": { + "version": "2.8.9", + "resolved": "https://registry.npmjs.org/hosted-git-info/-/hosted-git-info-2.8.9.tgz", + "integrity": "sha512-mxIDAb9Lsm6DoOJ7xH+5+X4y1LU/4Hi50L9C5sIswK3JzULS4bwk1FvjdBgvYR4bzT4tuUQiC15FE2f5HbLvYw==" + }, "node_modules/html-escaper": { "version": "2.0.2", "resolved": "https://registry.npmjs.org/html-escaper/-/html-escaper-2.0.2.tgz", @@ -3975,6 +4038,14 @@ "node": ">=10" } }, + "node_modules/invert-kv": { + "version": "1.0.0", + "resolved": "https://registry.npmjs.org/invert-kv/-/invert-kv-1.0.0.tgz", + "integrity": "sha512-xgs2NH9AE66ucSq4cNG1nhSFghr5l6tdL15Pk+jl46bmmBapgoaY/AacXyaDznAqmGL99TiLSQgO/XazFSKYeQ==", + "engines": { + "node": ">=0.10.0" + } + }, "node_modules/ip": { "version": "2.0.0", "resolved": "https://registry.npmjs.org/ip/-/ip-2.0.0.tgz", @@ -3988,6 +4059,11 @@ "node": ">= 0.10" } }, + "node_modules/is-arrayish": { + "version": "0.2.1", + "resolved": "https://registry.npmjs.org/is-arrayish/-/is-arrayish-0.2.1.tgz", + "integrity": "sha512-zz06S8t0ozoDXMG+ube26zeCTNXcKIPJZJi8hBrF4idCLms4CG9QtK7qBl1boi5ODzFpjswb5JPmHCbMpjaYzg==" + }, "node_modules/is-binary-path": { "version": "2.1.0", "resolved": "https://registry.npmjs.org/is-binary-path/-/is-binary-path-2.1.0.tgz", @@ -4003,7 +4079,6 @@ "version": "2.11.0", "resolved": "https://registry.npmjs.org/is-core-module/-/is-core-module-2.11.0.tgz", "integrity": "sha512-RRjxlvLDkD1YJwDbroBHMb+cukurkDWNyHx7D3oNB5x9rb5ogcksMC5wHCadcXoo67gVr/+3GFySh3134zi6rw==", - "dev": true, "dependencies": { "has": "^1.0.3" }, @@ -4295,7 +4370,6 @@ "version": "2.5.2", "resolved": "https://registry.npmjs.org/jsesc/-/jsesc-2.5.2.tgz", "integrity": "sha512-OYu7XEzjkCQ3C5Ps3QIZsQfNpqoJyZZA99wd9aWd05NCtC5pWOkShK2mkL6HXQR6/Cy2lbNdPlZBpuQHXE63gA==", - "dev": true, "bin": { "jsesc": "bin/jsesc" }, @@ -4303,6 +4377,11 @@ "node": ">=4" } }, + "node_modules/json-parse-better-errors": { + "version": "1.0.2", + "resolved": "https://registry.npmjs.org/json-parse-better-errors/-/json-parse-better-errors-1.0.2.tgz", + "integrity": "sha512-mrqyZKfX5EhL7hvqcV6WG1yYjnjeuYDzDhhcAAUrq8Po85NBQBJP+ZDUT75qZQ98IkUoBqdkExkukOU7Ts2wrw==" + }, "node_modules/json-schema": { "version": "0.4.0", "resolved": "https://registry.npmjs.org/json-schema/-/json-schema-0.4.0.tgz", @@ -4381,6 +4460,17 @@ "resolved": "https://registry.npmjs.org/kuler/-/kuler-2.0.0.tgz", "integrity": "sha512-Xq9nH7KlWZmXAtodXDDRE7vs6DU1gTU8zYDHDiWLSip45Egwq3plLHzPn27NgvzL2r1LMPC1vdqh98sQxtqj4A==" }, + "node_modules/lcid": { + "version": "1.0.0", + "resolved": "https://registry.npmjs.org/lcid/-/lcid-1.0.0.tgz", + "integrity": "sha512-YiGkH6EnGrDGqLMITnGjXtGmNtjoXw9SVUzcaos8RBi7Ps0VBylkq+vOcY9QE5poLasPCR849ucFUkl0UzUyOw==", + "dependencies": { + "invert-kv": "^1.0.0" + }, + "engines": { + "node": ">=0.10.0" + } + }, "node_modules/lines-and-columns": { "version": "2.0.3", "resolved": "https://registry.npmjs.org/lines-and-columns/-/lines-and-columns-2.0.3.tgz", @@ -4390,6 +4480,24 @@ "node": "^12.20.0 || ^14.13.1 || >=16.0.0" } }, + "node_modules/linker": { + "resolved": "packages/linker", + "link": true + }, + "node_modules/load-json-file": { + "version": "4.0.0", + "resolved": "https://registry.npmjs.org/load-json-file/-/load-json-file-4.0.0.tgz", + "integrity": "sha512-Kx8hMakjX03tiGTLAIdJ+lL0htKnXjEZN6hk/tozf/WOuYGdZBJrZ+rCJRbVCugsjB3jMLn9746NsQIf5VjBMw==", + "dependencies": { + "graceful-fs": "^4.1.2", + "parse-json": "^4.0.0", + "pify": "^3.0.0", + "strip-bom": "^3.0.0" + }, + "engines": { + "node": ">=4" + } + }, "node_modules/locate-path": { "version": "6.0.0", "resolved": "https://registry.npmjs.org/locate-path/-/locate-path-6.0.0.tgz", @@ -4622,7 +4730,6 @@ "resolved": "https://registry.npmjs.org/mkdirp/-/mkdirp-0.5.1.tgz", "integrity": "sha512-SknJC52obPfGQPnjIkXbmA6+5H15E+fR+E4iR2oQ3zzCLbd7/ONua69R/Gw7AgkTLsRG+r5fzksYwWe1AgTyWA==", "deprecated": "Legacy versions of mkdirp are no longer supported. 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"resolved": "https://registry.npmjs.org/window-size/-/window-size-0.1.4.tgz", + "integrity": "sha512-2thx4pB0cV3h+Bw7QmMXcEbdmOzv9t0HFplJH/Lz6yu60hXYy5RT8rUu+wlIreVxWsGN20mo+MHeCSfUpQBwPw==" + }, "winston": { "version": "3.8.2", "resolved": "https://registry.npmjs.org/winston/-/winston-3.8.2.tgz", diff --git a/packages/es-sink/package.json b/packages/es-sink/package.json new file mode 100644 index 0000000000000000000000000000000000000000..774f49ca4de010176b2e78fd6be4bb3e88f39633 --- /dev/null +++ b/packages/es-sink/package.json @@ -0,0 +1,32 @@ +{ + "name": "es-sink", + "version": "2.0.0", + "description": "", + "main": "dist/index.js", + "dependencies": { + "concurrently": "^7.6.0", + "elasticsearch": "^16.7", + "nconf": "^0.12.0", + "request": "^2.87.0", + "typescript": "^4" + }, + "devDependencies": { + "@types/elasticsearch": "^5.0.40", + "@types/nconf": "0.10.3", + "@types/node": "^18", + "@types/winston": "^2.3.9", + "source-map-support": "^0.5.21", + "tslint": "^5.20.1" + }, + "scripts": { + "test": "echo \"Error: no test specified\" && exit 1", + "lint": "tslint -c tslint.json 'src/**/*.ts'", + "build": "tsc", + "prettier": "prettier -w 'src/**/*.ts'", + "watch": "concurrently -k -p \"[{name}]\" -n \"TypeScript,Node\" -c \"yellow.bold,cyan.bold,green.bold\" \"npm run watch-ts\" \"npm run watch-node\"", + "watch-node": "nodemon dist/linker-consumer.js", + "watch-ts": "tsc -w" + }, + "author": "", + "license": "ISC" +} diff --git a/packages/es-sink/src/connection.ts b/packages/es-sink/src/connection.ts new file mode 100644 index 0000000000000000000000000000000000000000..915c95f019de06c4c42ce3484db25f9a44abaa05 --- /dev/null +++ b/packages/es-sink/src/connection.ts @@ -0,0 +1,19 @@ +import elasticsearch = require('elasticsearch'); +import { Client } from 'elasticsearch'; +import { Provider } from 'nconf'; + +/** + * Connect to elastic-search + * @param nconf + * @returns {Client} + */ +export function createClient(nconf: Provider): Client { + return new elasticsearch.Client({ + hosts: [ + `${nconf.get('elasticsearch:server')}:${nconf.get( + 'elasticsearch:port' + )}/`, + ], + apiVersion: '7.7', + }); +} diff --git a/packages/es-sink/src/elasticsearch-writer.ts b/packages/es-sink/src/elasticsearch-writer.ts new file mode 100644 index 0000000000000000000000000000000000000000..130586cf0b91e2530da1da2ac086c642b85a4160 --- /dev/null +++ b/packages/es-sink/src/elasticsearch-writer.ts @@ -0,0 +1,90 @@ +import { createClient } from './connection'; +import { Client } from 'elasticsearch'; +import { InterfaceCore } from 'geolinker-common/dist/core'; +import { Writable } from 'stream'; + +export class ElasticsearchWriter extends Writable { + /** + * Batch size + * @type {string} + */ + private batchSize: number = 2000; + + /** + * Cache for batch + */ + private batch: any[] = []; + + /** + * Core + */ + private core: InterfaceCore; + + /** + * Target index + */ + private index: string = 'geolinker-new'; + + /** + * Elastic-search client + */ + private client: Client; + + /** + * Timeout if something went wrong + */ + private timeout: number = 1000; + + constructor(options: any = {}, core: InterfaceCore) { + super(options); + this.core = core; + this.client = createClient(core.getNconf()); + this.timeout = options.timeout || 1000; + this.batchSize = options.batchSize || 2000; + } + + public async _write(chunk, encoding, callback) { + this.batch.push(this.prepareMeta(chunk)); + this.batch.push(this.prepareData(chunk)); + if (this.batch.length > this.batchSize) { + await this.indexElasticsearch(this.batch, callback); + this.batch = []; + } else { + return setImmediate(callback); + } + } + + private async indexElasticsearch(batch, callback) { + try { + await this.client.bulk({ body: batch }); + return setImmediate(callback); + } catch (err) { + this.core.getLogger().error('Error communicating with ES', err); + setTimeout(() => this.indexElasticsearch(batch, callback), this.timeout); + } + } + private prepareMeta(row) { + return { + index: { + _index: this.index, + _id: row.id, + }, + }; + } + + private prepareData(row) { + return { + id: row.id, + provider: row.provider, + url: row.url, + name: row.name, + alternative_name: row.alternative_name, + typology: row.typology, + country: row.country, + start: row.start, + end: row.end, + location: row.location, + modification_date: row.modification_date, + }; + } +} diff --git a/packages/es-sink/src/index.ts b/packages/es-sink/src/index.ts new file mode 100644 index 0000000000000000000000000000000000000000..8ecf87e97f079d8214abfc2a757217c60baa4545 --- /dev/null +++ b/packages/es-sink/src/index.ts @@ -0,0 +1,14 @@ +import { Core } from 'geolinker-common'; +import { ElasticsearchWriter } from './elasticsearch-writer'; +/** + * load config + */ +const core = Core.init('es-sink', __dirname + '/../config.json'); +export const elasticsearchWriter = new ElasticsearchWriter( + { objectMode: true, batchSize: 500 }, + core, +); +export function createElasticsearchWriter() { + return new ElasticsearchWriter({ objectMode: true, batchSize: 500 }, core); +} +export default ElasticsearchWriter; diff --git a/packages/geoname-dump-producer/.gitignore b/packages/geoname-dump-producer/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e11d776122fd93fa29de1683e671b3f61724edb0 --- /dev/null +++ b/packages/geoname-dump-producer/.gitignore @@ -0,0 +1,63 @@ +# Logs +logs +*.log +npm-debug.log* +yarn-debug.log* +yarn-error.log* + +# Runtime data +pids +*.pid +*.seed +*.pid.lock + +# Directory for instrumented libs generated by jscoverage/JSCover +lib-cov + +# Coverage directory used by tools like istanbul +coverage + +# nyc test coverage +.nyc_output + +# Grunt intermediate storage (http://gruntjs.com/creating-plugins#storing-task-files) +.grunt + +# Bower dependency directory (https://bower.io/) +bower_components + +# node-waf configuration +.lock-wscript + +# Compiled binary addons (https://nodejs.org/api/addons.html) +build/Release + +# Dependency directories +node_modules/ +jspm_packages/ + +# TypeScript v1 declaration files +typings/ + +# Optional npm cache directory +.npm + +# Optional eslint cache +.eslintcache + +# Optional REPL history +.node_repl_history + +# Output of 'npm pack' +*.tgz + +# Yarn Integrity file +.yarn-integrity + +# dotenv environment variables file +.env + +# next.js build output +.next +dist/ +.idea/ diff --git a/packages/geoname-dump-producer/.gitlab-ci.yml b/packages/geoname-dump-producer/.gitlab-ci.yml new file mode 100644 index 0000000000000000000000000000000000000000..3f30dbdf7d6e17d0a849980511103b7c93cfd5f1 --- /dev/null +++ b/packages/geoname-dump-producer/.gitlab-ci.yml @@ -0,0 +1,4 @@ +include: + - project: 'histhub/node-kafka-docker-base' + ref: 'master' + file: '.gitlab-ci.yml' diff --git a/packages/geoname-dump-producer/Dockerfile b/packages/geoname-dump-producer/Dockerfile new file mode 100644 index 0000000000000000000000000000000000000000..c0c056ddf69c1db64a6e2daf19f2dee6d4a40a61 --- /dev/null +++ b/packages/geoname-dump-producer/Dockerfile @@ -0,0 +1,14 @@ +FROM source.dodis.ch:4577/histhub/node-kafka-docker-base:latest + +# copy app to the container +COPY package.json package-lock.json config.json tsconfig.json /usr/local/app/ +COPY src /usr/local/app/src + +# Install dependencies +RUN npm install + +# build stuff +RUN npm run build + +# run app +CMD node dist/index.js diff --git a/packages/geoname-dump-producer/config.json b/packages/geoname-dump-producer/config.json new file mode 100644 index 0000000000000000000000000000000000000000..50299ea2fa35d41af61709c9690c85c807697e58 --- /dev/null +++ b/packages/geoname-dump-producer/config.json @@ -0,0 +1,7 @@ +{ + "log-dir": "/tmp", + "elasticsearch": { + "server": "http://localhost", + "port": 9200 + } +} diff --git a/packages/geoname-dump-producer/package-lock.json b/packages/geoname-dump-producer/package-lock.json new file mode 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"watch-ts": "tsc -w", + "serve": "node dist/index.js" + }, + "author": "", + "license": "ISC", + "dependencies": { + "@types/node": "^18.11", + "concurrently": "^7", + "request": "^2.8", + "typescript": "^4.9", + "unzip-stream": "^0.3.1" + }, + "devDependencies": { + "@types/chai": "^4.3.4", + "@types/mocha": "^10.0.1", + "chai": "^4.3.7", + "mocha": "^10", + "sinon": "^15.0.1", + "ts-node": "^10.9", + "tslint": "^5.20.1" + } +} diff --git a/packages/geoname-dump-producer/readme.md b/packages/geoname-dump-producer/readme.md new file mode 100644 index 0000000000000000000000000000000000000000..734810d7f94144c65e0644009b33f921e4837a93 --- /dev/null +++ b/packages/geoname-dump-producer/readme.md @@ -0,0 +1,21 @@ +# geonames-dump-producer +This small scripts streams the [geonames dump](http://download.geonames.org/export/dump/allCountries.zip) form the internet to kafka. + +## SplitterTransformer +The SplitterTransformer split the string data into logical chunks. It will generate one chunk for each line separated by \n. + +## GeonamesNormalizerTransformer +The GeonamesNormalizerTransformer normalizes the data from geonames and streams the result to kafka `geolinker` topic. + +## Docker +To build the image use the following command. The container based on the [histub/ node-kafka-docker-base](https://source.dodis.ch/histhub/node-kafka-docker-base). +```bash +docker build -t source.dodis.ch:4577/histhub/geonames-dump-producer . +# Upload to the registry +docker push source.dodis.ch:4577/histhub/geonames-dump-producer +``` +## CD +We have a build pipeline in gitlab. So manually building of the image is not longer necessary. + +## Deploy to k8 +This streaming app is part of the [data helm chart](https://source.dodis.ch/histhub/charts/tree/master/charts/data). diff --git a/packages/geoname-dump-producer/src/geonames-normalizer-transformer.ts b/packages/geoname-dump-producer/src/geonames-normalizer-transformer.ts new file mode 100644 index 0000000000000000000000000000000000000000..73c8a16065e312ba3d47d956c321c2345c21efd8 --- /dev/null +++ b/packages/geoname-dump-producer/src/geonames-normalizer-transformer.ts @@ -0,0 +1,104 @@ +import { Transform, TransformOptions } from 'stream'; + +/** + * @inheritDoc + */ +export interface ISplitterOptions extends TransformOptions { + delimiter?: string; + defaultDate?: string; +} + +class GeonamesNormalizerTransformer extends Transform { + /** + * Delimiter of the column + */ + private readonly delimiter: string = '\t'; + + /** + * A default date string if transformation fails + * @type {string} + */ + private readonly defaultDate: string = '1970-01-01'; + + constructor(options: ISplitterOptions) { + super(options); + this.delimiter = options.delimiter || '\t'; + this.defaultDate = options.defaultDate || '1970-01-01'; + } + + /** + * @inheritDoc + * @param chunk + * @param {string} encoding + * @param {(err?: Error) => void} callback + * @private + */ + public _transform(chunk, encoding, callback) { + const obj = chunk.toString().split(this.delimiter); + if (isNaN(parseInt(obj[0], 10))) { + return callback(null); + } + + // check the date + const result = { + id: obj[0].toString(), + provider: 'geoname', + name: obj[1] || null, + url: `http://geonames.org/${parseInt(obj[0], 10)}`, + alternative_name: obj[3] || null, + typology: [this.checkTypology(obj)], + // typology + country: obj[8] || null, + modification_date: this.checkDate(obj[18]), + // todo: we need to transform those values + // https://stackoverflow.com/a/39793940 + location: this.checkLocation(obj), + }; + callback(null, result); + } + + /** + * check if typology is valid + * @param obj + * @returns {any} + */ + private checkTypology(obj) { + if (typeof obj[6] !== 'undefined' && typeof obj[7] !== 'undefined') { + return `${obj[6]}.${obj[7]}`; + } else if (typeof obj[6] !== 'undefined') { + return obj[6]; + } else if (typeof obj[5] !== 'undefined') { + return obj[5]; + } + return ''; + } + + /** + * Check if the location is valid + * @param obj + * @returns {any} + */ + private checkLocation(obj) { + if (typeof obj[4] !== 'undefined' && typeof obj[5] !== 'undefined') { + return `${obj[4]},${obj[5]}`; + } + return null; + } + /** + * Check if date is valid or return a old date + * @param {string} date + * @returns {string} + */ + private checkDate(date: string) { + const testDate = new Date(date); + if (isNaN(testDate.getTime())) { + return this.defaultDate; + } + return `${testDate.getFullYear()}-${testDate.getMonth() + 1}-${testDate + .getDate() + .toString() + .padStart(2, '0')}`; + } +} + +export default GeonamesNormalizerTransformer; diff --git a/packages/geoname-dump-producer/src/index.ts b/packages/geoname-dump-producer/src/index.ts new file mode 100644 index 0000000000000000000000000000000000000000..f37945fae73d97fa36a2c85971013a3d22491cdd --- /dev/null +++ b/packages/geoname-dump-producer/src/index.ts @@ -0,0 +1,27 @@ +import ElasticsearchWriter from 'es-sink'; +import { Core } from 'geolinker-common'; +import request = require('request'); +import unzip = require('unzip-stream'); +import GeonamesNormalizerTransformer from './geonames-normalizer-transformer'; +import SplitterTransformer from './splitter-transformer'; + +const core = Core.init('geonames-dump-producer', __dirname + '/../config.json'); +const stream = request( + 'http://download.geonames.org/export/dump/allCountries.zip', +) + .pipe(unzip.Parse()) + .on('entry', (entry) => { + const filePath = entry.path; + if (filePath === 'allCountries.txt') { + core.getLogger().info('Got zip'); + entry + .pipe(new SplitterTransformer({ delimiter: '\n', objectMode: true })) + .pipe(new GeonamesNormalizerTransformer({ objectMode: true })) + .pipe(new ElasticsearchWriter({ objectMode: true, batchSize: 500 }, core)); + } else { + entry.autodrain(); + } + }); +stream.on('end', () => { + core.getLogger().info('Job is done'); +}); diff --git a/packages/geoname-dump-producer/src/splitter-transformer.ts b/packages/geoname-dump-producer/src/splitter-transformer.ts new file mode 100644 index 0000000000000000000000000000000000000000..0abae295952a086438b1332854548cb382d04c9c --- /dev/null +++ b/packages/geoname-dump-producer/src/splitter-transformer.ts @@ -0,0 +1,57 @@ +import { Transform, TransformOptions } from 'stream'; + +/** + * @inheritDoc + */ +export interface ISplitterOptions extends TransformOptions { + delimiter?: string; +} + +class SplitterTransformer extends Transform { + /** + * Reporter + */ + private readonly delimiter: string; + + /** + * Direction of the flow + */ + private chunk: string = ''; + + constructor(options: ISplitterOptions = { delimiter: '\n' }) { + super(options); + this.delimiter = options.delimiter; + } + + /** + * @inheritDoc + * @param chunk + * @param {string} encoding + * @param {(err?: Error) => void} callback + * @private + */ + public _transform(chunk, encoding, callback) { + const combinedChunk = this.chunk + chunk; + // reset chunk + this.chunk = ''; + const splits = combinedChunk.split(this.delimiter); + if (splits.length > 1) { + for (let i = 0; i < splits.length - 2; i++) { + this.push(splits[i]); + } + // check for last split + if (combinedChunk.endsWith('\n')) { + this.push(splits[splits.length - 2]); + } else { + this.chunk = splits[splits.length - 1]; + } + } else if (splits.length === 1) { + this.push(splits); + } else { + this.chunk = chunk; + } + callback(); + } +} + +export default SplitterTransformer; diff --git a/packages/geoname-dump-producer/test/fixtures/1.txt b/packages/geoname-dump-producer/test/fixtures/1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e8607db0c162b93b3db2d479109000cd10388843 --- /dev/null +++ b/packages/geoname-dump-producer/test/fixtures/1.txt @@ -0,0 +1 @@ +2986043 Pic de Font Blanca Pic de Font Blanca Pic de Font Blanca,Pic du Port 42.64991 1.53335 T PK AD 00 0 2860 Europe/Andorra 2014-11-05 diff --git a/packages/geoname-dump-producer/test/geonames-normalizer-transformer.spec.ts b/packages/geoname-dump-producer/test/geonames-normalizer-transformer.spec.ts new file mode 100644 index 0000000000000000000000000000000000000000..cbe9ad303e86379a3a0316224a4bf73d98c4469a --- /dev/null +++ b/packages/geoname-dump-producer/test/geonames-normalizer-transformer.spec.ts @@ -0,0 +1,48 @@ +import * as fs from "fs"; +import chai = require('chai'); +import {describe, it, before} from 'mocha'; +import GeonamesNormalizerTransformer from '../src/geonames-normalizer-transformer'; + +// prepare environment +process.env.NODE_ENV = 'test'; + +describe('Test splitter-transformer', () => { + + before((done) => { + chai.should(); + done(); + }); + + + it('Split strings in chunks', (done) => { + const mock = fs.readFileSync(__dirname + '/fixtures/1.txt', 'utf-8'); + const options = { + objectMode: true, + delimiter: '\t' + }; + const splitterTransformer = new GeonamesNormalizerTransformer(options); + + // listener to check output + let counter=0; + splitterTransformer.on('data', (data: any) => { + const expect = { + id: "2986043", + provider: 'geoname', + url: `http://geonames.org/2986043`, + name: 'Pic de Font Blanca', + alternative_name: 'Pic de Font Blanca,Pic du Port', + typology: ['T.PK'], + country: 'AD', + location: '42.64991,1.53335', + modification_date: '2014-11-05' + }; + data.should.deep.equal(expect); + }); + splitterTransformer.on('end', () => { + done() + }); + splitterTransformer.write(mock); + splitterTransformer.end(); + }); +}); + diff --git a/packages/geoname-dump-producer/test/splitter-transformer.spec.ts b/packages/geoname-dump-producer/test/splitter-transformer.spec.ts new file mode 100644 index 0000000000000000000000000000000000000000..26487234c97d5ae2d26f1cc5b41d73444ac0445e --- /dev/null +++ b/packages/geoname-dump-producer/test/splitter-transformer.spec.ts @@ -0,0 +1,62 @@ +import chai = require('chai'); +import {describe, it, before} from 'mocha'; +import SplitterTransformer from '../src/splitter-transformer'; + +// prepare environment +process.env.NODE_ENV = 'test'; + +describe('Test splitter-transformer', () => { + + before((done) => { + chai.should(); + done(); + }); + + + it('Split strings in chunks', (done) => { + const mock = "test\ntest\n"; + const options = { + objectMode: true, + delimiter: '\n' + }; + const splitterTransformer = new SplitterTransformer(options); + + // listener to check output + let counter=0; + splitterTransformer.on('data', (data: any) => { + data.should.be.eq('test'); + counter++; + }); + splitterTransformer.on('end', () => { + counter.should.be.eq(2); + done() + }); + splitterTransformer.write(mock); + splitterTransformer.end(); + }); + + + it('Split longer strings in chunks', (done) => { + const mock = "test\ntest\n vfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv fvfrfv vfrv fvv vfv vfv f\nbbb\n"; + const options = { + objectMode: true, + delimiter: '\n' + }; + const splitterTransformer = new SplitterTransformer(options); + + // listener to check output + let counter=0; + let last = ''; + splitterTransformer.on('data', (data: any) => { + last = data; + counter++; + }); + splitterTransformer.on('end', () => { + counter.should.be.eq(4); + last.should.be.eq('bbb'); + done() + }); + splitterTransformer.write(mock); + splitterTransformer.end(); + }); +}); diff --git a/packages/geoname-dump-producer/tsconfig.json b/packages/geoname-dump-producer/tsconfig.json new file mode 100644 index 0000000000000000000000000000000000000000..3b50d2c5f75f14bdc5cf89a4eef8e45f1cd69315 --- /dev/null +++ b/packages/geoname-dump-producer/tsconfig.json @@ -0,0 +1,19 @@ +{ + "compilerOptions": { + "target": "es6", + "module": "commonjs", + "outDir": "dist", + "inlineSourceMap": true, + "declaration": true, + "moduleResolution": "node", + "typeRoots": [ + "node_modules/@types" + ] + }, + "include": [ + "src/**/*.ts" + ], + "exclude": [ + "node_modules" + ] +} diff --git a/packages/geoname-dump-producer/tslint.json b/packages/geoname-dump-producer/tslint.json new file mode 100644 index 0000000000000000000000000000000000000000..e50928706e6a9d4116d3e384fc25fd2a0867bcba --- /dev/null +++ b/packages/geoname-dump-producer/tslint.json @@ -0,0 +1,15 @@ +{ + "defaultSeverity": "error", + "extends": [ + "tslint:recommended" + ], + "jsRules": {}, + "rules": { + "quotemark": [ + true, + "single" + ], + "object-literal-sort-keys": false + }, + "rulesDirectory": [] +} \ No newline at end of file diff --git a/packages/linker/.gitignore b/packages/linker/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..ad46b30886fa350c1f59761b100e5e4b01f9a7ec --- /dev/null +++ b/packages/linker/.gitignore @@ -0,0 +1,61 @@ +# Logs +logs +*.log +npm-debug.log* +yarn-debug.log* +yarn-error.log* + +# Runtime data +pids +*.pid +*.seed +*.pid.lock + +# Directory for instrumented libs generated by jscoverage/JSCover +lib-cov + +# Coverage directory used by tools like istanbul +coverage + +# nyc test coverage +.nyc_output + +# Grunt intermediate storage (http://gruntjs.com/creating-plugins#storing-task-files) +.grunt + +# Bower dependency directory (https://bower.io/) +bower_components + +# node-waf configuration +.lock-wscript + +# Compiled binary addons (https://nodejs.org/api/addons.html) +build/Release + +# Dependency directories +node_modules/ +jspm_packages/ + +# TypeScript v1 declaration files +typings/ + +# Optional npm cache directory +.npm + +# Optional eslint cache +.eslintcache + +# Optional REPL history +.node_repl_history + +# Output of 'npm pack' +*.tgz + +# Yarn Integrity file +.yarn-integrity + +# dotenv environment variables file +.env + +# next.js build output +.next diff --git a/packages/linker/.gitlab-ci.yml b/packages/linker/.gitlab-ci.yml new file mode 100644 index 0000000000000000000000000000000000000000..3f30dbdf7d6e17d0a849980511103b7c93cfd5f1 --- /dev/null +++ b/packages/linker/.gitlab-ci.yml @@ -0,0 +1,4 @@ +include: + - project: 'histhub/node-kafka-docker-base' + ref: 'master' + file: '.gitlab-ci.yml' diff --git a/packages/linker/Dockerfile b/packages/linker/Dockerfile new file mode 100644 index 0000000000000000000000000000000000000000..c0c056ddf69c1db64a6e2daf19f2dee6d4a40a61 --- /dev/null +++ b/packages/linker/Dockerfile @@ -0,0 +1,14 @@ +FROM source.dodis.ch:4577/histhub/node-kafka-docker-base:latest + +# copy app to the container +COPY package.json package-lock.json config.json tsconfig.json /usr/local/app/ +COPY src /usr/local/app/src + +# Install dependencies +RUN npm install + +# build stuff +RUN npm run build + +# run app +CMD node dist/index.js diff --git a/packages/linker/Readme.md b/packages/linker/Readme.md new file mode 100644 index 0000000000000000000000000000000000000000..c15426a3f69ccc90f8cce500e539679ef71e28d4 --- /dev/null +++ b/packages/linker/Readme.md @@ -0,0 +1,18 @@ +# linker +The linker is a [kafka sink](https://docs.confluent.io/current/connect/kafka-connect-elasticsearch/index.html) for the [neo4j](https://neo4j.com/) graph database. It consumes messages from the `linker` topic and writes them to the database. + +## Neo4jStreamWriter +The Neo4jStreamWriter consumes a stream of kafka messages and writes the content of the message to the database. It is very simple and can handle backpressure. + +## Docker +To build the image use the following command. The container is based on the [histub/ node-kafka-docker-base](https://source.dodis.ch/histhub/node-kafka-docker-base). +```bash +docker build -t source.dodis.ch:4577/histhub/linker . +# Upload to the registry +docker push source.dodis.ch:4577/histhub/linker +``` +## CD +We have a build pipeline in gitlab. So manual building of the image is no longer necessary. + +## Deploy to k8 +This streaming app is part of the [deploy geolinker helm chart](https://source.dodis.ch/histhub/deploy-geolinker/wikis/deployment-manual#linker). diff --git a/packages/linker/config.json b/packages/linker/config.json new file mode 100644 index 0000000000000000000000000000000000000000..a7f1d023923e9eb4bd08e261b7e213d882d601cb --- /dev/null +++ b/packages/linker/config.json @@ -0,0 +1,34 @@ +{ + "kafka": { + "broker": "localhost:29092", + "schema-registry": "http://localhost:8081" + }, + "consumer": { + "config": { + "group.id": "linker", + "socket.keepalive.enable": true, + "enable.auto.commit": true, + "queued.max.messages.kbytes": 100 + }, + "topics": { + "topics": ["linker"], + "config": { + "auto.offset.reset": "largest" + } + }, + "stream": { + "request.required.acks": 1 + } + }, + "neo4j": { + "config": { + "uri": "bolt://localhost:7687", + "user": "neo4j", + "password": "tester" + } + }, + "log-dir": "/tmp", + "reporter": { + "url": "http://dashboard-api" + } +} diff --git a/packages/linker/package-lock.json b/packages/linker/package-lock.json new file mode 100644 index 0000000000000000000000000000000000000000..26b984568fbd8fd2a6286ed0fb14fe396728c961 --- /dev/null +++ b/packages/linker/package-lock.json @@ -0,0 +1,1392 @@ +{ + "name": "linker", + "version": "1.0.0", + "lockfileVersion": 1, + "requires": true, + "dependencies": { + "@types/caseless": { + "version": "0.12.1", + "resolved": "https://registry.npmjs.org/@types/caseless/-/caseless-0.12.1.tgz", + "integrity": "sha512-FhlMa34NHp9K5MY1Uz8yb+ZvuX0pnvn3jScRSNAb75KHGB8d3rEU6hqMs3Z2vjuytcMfRg6c5CHMc3wtYyD2/A==" + }, + "@types/es6-promise": { + "version": "3.3.0", + "resolved": "https://registry.npmjs.org/@types/es6-promise/-/es6-promise-3.3.0.tgz", + "integrity": "sha512-ixCIAEkLUKv9movnHKCzx2rzAJgEnSALDXPrOSSwOjWwXFs0ssSZKan+O2e3FExPPCbX+DfA9NcKsbvLuyUlNA==", + "requires": { + "es6-promise": "*" + } + }, + "@types/form-data": 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--git a/packages/linker/package.json b/packages/linker/package.json new file mode 100644 index 0000000000000000000000000000000000000000..2d6f81bef7139f65df3025758aa9646c4d2723e8 --- /dev/null +++ b/packages/linker/package.json @@ -0,0 +1,30 @@ +{ + "name": "linker", + "version": "1.0.0", + "description": "", + "main": "dist/index.js", + "dependencies": { + "@types/node": "^9.6.19", + "@types/winston": "^2.3.9", + "concurrently": "^3.5.1", + "jsesc": "^2.5.2", + "nconf": "^0.10.0", + "neo4j-driver": "^1.6.1", + "request": "^2.87.0", + "typescript": "^2.8.4" + }, + "devDependencies": { + "source-map-support": "^0.5.6", + "tslint": "^5.10.0" + }, + "scripts": { + "test": "echo \"Error: no test specified\" && exit 1", + "lint": "node_modules/.bin/tslint -c tslint.json 'src/**/*.ts'", + "build": "node_modules/.bin/tsc", + "watch": "concurrently -k -p \"[{name}]\" -n \"TypeScript,Node\" -c \"yellow.bold,cyan.bold,green.bold\" \"npm run watch-ts\" \"npm run watch-node\"", + "watch-node": "nodemon dist/linker-consumer.js", + "watch-ts": "tsc -w" + }, + "author": "", + "license": "ISC" +} diff --git a/packages/linker/src/index.ts b/packages/linker/src/index.ts new file mode 100644 index 0000000000000000000000000000000000000000..57456ac031a7656e073e92d3eee80d68209458f2 --- /dev/null +++ b/packages/linker/src/index.ts @@ -0,0 +1,75 @@ +import fmt = require('bunyan-format'); +import {Core} from 'geolinker-common'; +import Neo4jStreamWriter from './neo4j-stream-writer'; +import {v1 as neo4j} from 'neo4j-driver'; +import KafkaAvro = require('kafka-avro'); +import Session from 'neo4j-driver/types/v1/session'; + +/** + * To trigger this you need to set the KAFKA_AVRO_LOG_LEVEL + * Move this to geolinker-common + * f.e. env KAFKA_AVRO_LOG_LEVEL=debug node dist/index.js + */ +const kafkaLog = KafkaAvro.getLogger(); + +kafkaLog.addStream({ + type: 'stream', + stream: fmt({ + outputMode: 'short', + levelInString: true, + }), + level: 'debug', +}); + +/** + * load sourcemap and config + */ +const core = Core.init('linker', __dirname + '/../config.json'); + +/** + * This consumer listen to the linker topic and save the data into neo4j + */ +const kafka = core.getKafkaAvro(); +kafka.init().then(() => { + /** + * Get the consumer subscribed to the topic linker + */ + kafka.getConsumerStream().then(async (consumer) => { + core.getLogger().info('Got streamConsumer'); + + let counter = 0; + /** + * Connect to neo4j + * @type {Driver} + */ + const driver = neo4j.driver( + core.getNconf().get('neo4j:config:uri'), + neo4j.auth.basic( + core.getNconf().get('neo4j:config:user'), + core.getNconf().get('neo4j:config:password'), + )); + + /** + * Add index and constraint to DB. If the index exists the query is ignored + * todo: not 100% sure if this is the right place to define the indexes + */ + await driver.session().run('CREATE CONSTRAINT ON (p:Place) ASSERT p.uri IS UNIQUE'); + + /** + * pipe the stream from kafka fo neo4j + */ + consumer + .pipe(new Neo4jStreamWriter({objectMode: true}, driver, core)); + + consumer.on('data', () => { + counter++; + core.getReporter().setDataIn(1); + }); + setInterval(() => { + console.log('Count : ' + counter); + }, 30000); + }); +}, (err) => { + core.getLogger().error('Error while connecting to kafka'); + throw err; +}); diff --git a/packages/linker/src/neo4j-stream-writer.ts b/packages/linker/src/neo4j-stream-writer.ts new file mode 100644 index 0000000000000000000000000000000000000000..834add3550b4212bc068e66f1c37fb2306ebeefa --- /dev/null +++ b/packages/linker/src/neo4j-stream-writer.ts @@ -0,0 +1,74 @@ +/* + * node-rdkafka - Node.js wrapper for RdKafka C/C++ library + * + * Copyright (c) 2016 Blizzard Entertainment + * + * This software may be modified and distributed under the terms + * of the MIT license. See the LICENSE.txt file for details. + */ + +import {Writable} from 'stream'; +import Session from 'neo4j-driver/types/v1/session'; +import Driver from 'neo4j-driver/types/v1/driver'; +import {InterfaceCore} from 'geolinker-common/dist/core'; +import * as jsesc from 'jsesc'; + +class Neo4jStreamWriter extends Writable { + /** + * Escape special characters + * @param {string} param + * @returns {string} + */ + private static escape(param: string) { + // BC: we change the nodenames.... + return jsesc(encodeURI(param)); + } + + private neo4j; + private timeout = 500; + private core; + + constructor(options = {}, neo4j: Driver, core: InterfaceCore) { + super(options); + this.neo4j = neo4j; + this.core = core; + } + + public async _write(chunk, encoding, callback) { + const query = this.buildQuery(chunk.parsed); + const neo4jSession: Session = this.neo4j.session(); + try { + await neo4jSession.run(query); + neo4jSession.close(); + this.core.getReporter().setDataOut(1); + setImmediate(callback); + } catch (e) { + neo4jSession.close(); + // Just delay this thing a bit and pass the params + // backpressure will get exerted this way. + // todo: check the error first + // neo4j.error.SERVICE_UNAVAILABLE + this.core.getLogger().error(e); + this.core.getLogger().error('from' + chunk.parsed.from); + setTimeout(() => { + this._write(chunk, encoding, callback); + }, this.timeout); + } + } + + /** + * Build the query + * todo: we should move this into a transformer + * todo: we should use parameters f.e. https://stackoverflow.com/questions/42397773/neo4j-what-is-the-syntax-to-set-cypher-query-parameters-in-the-browser-interfac + * @param connection + */ + private buildQuery(connection) { + let query = `MERGE (o:Place {uri:'${Neo4jStreamWriter.escape(connection.from)}'}) `; + connection.to.forEach((current, i) => { + query += ` MERGE (t${i}:Place {uri:'${Neo4jStreamWriter.escape(current)}'}) `; + query += ` MERGE (o)-[:${connection.relation.type} {author:'${connection.relation.author}'}]->(t${i}) `; + }); + return query; + } +} +export default Neo4jStreamWriter; diff --git a/packages/linker/tsconfig.json b/packages/linker/tsconfig.json new file mode 100644 index 0000000000000000000000000000000000000000..21f4a9228bffa731bd43d5a4b1fdc67c5e065d71 --- /dev/null +++ b/packages/linker/tsconfig.json @@ -0,0 +1,19 @@ +{ + "compilerOptions": { + "target": "es6", + "module": "commonjs", + "outDir": "dist", + "inlineSourceMap": true, + "declaration": false, + "moduleResolution": "node", + "typeRoots": [ + "node_modules/@types" + ] + }, + "include": [ + "src/**/*.ts" + ], + "exclude": [ + "node_modules" + ] +} diff --git a/packages/linker/tslint.json b/packages/linker/tslint.json new file mode 100644 index 0000000000000000000000000000000000000000..b1d6c2bfc9423122441625baf1c65939c142fa59 --- /dev/null +++ b/packages/linker/tslint.json @@ -0,0 +1,16 @@ +{ + "defaultSeverity": "error", + "extends": [ + "tslint:recommended" + ], + "jsRules": {}, + "rules": { + "quotemark": [ + true, + "single" + ], + "object-literal-sort-keys": false, + "ordered-imports": false + }, + "rulesDirectory": [] +} \ No newline at end of file